Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatgggcgccttttatttgatctattgattgttgcagaatggatgcataatttcactgtttcctttctaaagcttttcatctcaactgttatatgtcatttatatttatttgtttgagtcctgtttatgccatctgtctcctcaaagcagATAAGAATCTCTTGGCTGCTCACCTGTCGCATCTTCCCCGATTCAAAATCGTCCTGGTCGCATCTTCCCCGATTCAAAATCGCCCAGTTGAGTTTTCCAA

Basic information

species Zea mays
transcript GRMZM2G478779_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046414|gb|BF728553.1|BF728553
EST:     CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCA                         ATAAGAATCTCTTGGCT
genomic: CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCAgtaagttaat ... ctcaaagcagATAAGAATCTCTTGGCT
EST: gi|166456293|gb|EG173141.1|EG173141
EST:     CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCA                         ATAAGAATCTCTTGGCTGCTCACCTGTCGCATCTTCCCCGATTCAAAA
genomic: CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCAgtaagttaat ... ctcaaagcagATAAGAATCTCTTGGCTGCTCACCTGTCGCATCTTCCCCGATTCAAAA
EST: gi|78180437|gb|DV550810.1|DV550810
EST:     CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCA                         ATAAGAATCTCTTGGCTGCTCACCTGTTG-AGTTTTCCCCGTTTCAAAATT
genomic: CCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCAgtaagttaat ... ctcaaagcagATAAGAATCTCTTGGCTGCTCACCTGTCGCA-TCTTCCCCGATTCAAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttatatttatttgtttgagtcctgtttatgccatctgtctcctcaaagcagATAAGAATCTCTTGGCTGCTCACCTGTCGCATCTTCCCCGATTCAAAATCGTCCTGGTCGCATCTTCCCCGATTCAAAATCGCCCAGTTGAGTTTTCCAA
                                  ccatctgtctcctc  CT-rich tract
     tatatttatttgtttg  TA-rich tract