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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcttactcagatcacttatgcgacattgtcttattttttaaagtaacggatttttcttttgcagGTTTTTTGACCGAGACATTGAATGTATCTACAAGTTCTTTAACAAAAG

Basic information

species Zea mays
transcript GRMZM2G472991_T04
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456479|gb|CA828062.1|CA828062
EST:     AAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAGAT        
genomic: TTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagct ... tcttttgcagG
EST: gi|33094905|gb|CF054899.1|CF054899
EST:     AAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAAT        
genomic: TTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagct ... tcttttgcagG
EST: gi|20301471|gb|BQ164414.1|BQ164414
EST:     AAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAGAT        
genomic: TTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagct ... tcttttgcagG
EST: gi|33095027|gb|CF055021.1|CF055021
EST:     AAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAAT        
genomic: TTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagct ... tcttttgcagG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcacttatgcgacattgtcttattttttaaagtaacggatttttcttttgcagGTTTTTTGACCGAGACATTGAATGTATCTACAAGTTCTTTAACAAAAG
                               aagtaac  putative branch site (score: 2)
                                         tttttcttttgc  putative PPT
               attgtcttatttttta  TA-rich tract