1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacggaacggaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTAGCGTTCATGGGCGTATAATCACAGCGTTGATTGTATCGCAACTGCTGC
species | Zea mays |
transcript | GRMZM2G456000_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAG ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTEST: gi|78105550|gb|DV523968.1|DV523968
genomic: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
EST: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAG ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTEST: gi|60342392|gb|DN209365.1|DN209365
genomic: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
EST: TCCGCCACCAG ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
genomic: TCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
gagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTAGCGTTCATGGGCGTATAATCACAGCGTTGATTGTATCGCAACTGCTGC
cactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggaacggaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTAGCGTTCATGGGCGTATAATCACAGCGTTGATTGTATCGCAACTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC