1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tacagtgcacgatttgttgtttgattgtggcatcatactgctgctataaaaatgatgcttgaaaactaaatctactggctgcctcttgtccttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATAGCAGCTTAGCCATCAATCCTCGCTACGTCCGGTCCTGGTTGGATCTTT
species | Zea mays |
transcript | GRMZM2G451366_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32847269|gb|CD986950.1|CD986950
genomic: AGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32841613|gb|CD981294.1|CD981294
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|71440388|gb|DR821438.1|DR821438
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32840746|gb|CD980427.1|CD980427
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|149109482|gb|EE293326.2|EE293326
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|89252033|gb|DY623819.1|DY623819
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32841252|gb|CD980933.1|CD980933
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32839985|gb|CD979666.1|CD979666
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32839499|gb|CD979180.1|CD979180
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGGATATCGATGTTTTTGCAGAGAATEST: gi|32839696|gb|CD979377.1|CD979377
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|60356118|gb|DN223091.1|DN223091
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32840986|gb|CD980667.1|CD980667
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32841145|gb|CD980826.1|CD980826
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32840104|gb|CD979785.1|CD979785
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32840762|gb|CD980443.1|CD980443
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|78123288|gb|DV541672.1|DV541672
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|60347494|gb|DN214467.1|DN214467
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|71326873|gb|DR800095.1|DR800095
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32863734|gb|CF003416.1|CF003416
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32841116|gb|CD980797.1|CD980797
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32841526|gb|CD981207.1|CD981207
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|32945502|gb|CF050321.1|CF050321
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATEST: gi|60357371|gb|DN224344.1|DN224344
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
EST: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCG AGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
genomic: ATGTTGAGTCAGTAATCCGAACTGTCAGATTAGTTTCTGAGAGTCTTGCGgtaagttaaa ... cttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAAT
ataaaaatgatgcttgaaaactaaatctactggctgcctcttgtccttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATAGCAGCTTAGCCATCAATCCTCGCTACGTCCGGTCCTGGTTGGATCTTT
aactaaa putative branch site (score: 112)
ctgcctcttgtccttc putative PPT
aaaactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacagtgcacgatttgttgtttgattgtggcatcatactgctgctataaaaatgatgcttgaaaactaaatctactggctgcctcttgtccttcttacagAGACACATCTATGGATTGAGAGGGAGGAATATCGATGTTTTTGCAGAGAATAGCAGCTTAGCCATCAATCCTCGCTACGTCCGGTCCTGGTTGGATCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - gtgcacg
- - - - - - - tgttgtt
- - - - - - - - - - -tgattgt
- - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactgg