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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccggaccggtcgccaaagagccatccatcattccatctccatgcggatgcaatgcaaggcctggcctggcctggccagctcgaacgcgcgcggcgtgtgtgtgtgtgtccctgttgcgctcacccgtacgtgcccgcgcctctgctcggcgcgctggctgtgcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGCCGCGGCAGGCGGCCAGGGGCCTCCTGGCGCTCGGCGACTACTTCCAGC

Basic information

species Zea mays
transcript GRMZM2G445575_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G445575_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g54474.2 (Oryza sativa), 3'ss of exon 9
gtaaaccggaccggtcgccaaagagccatccatcattccatctccatgcggatgcaatgcaaggcctggcctggcctggccagctcgaacgcgcgcggcgtgtgtgtgtgtgtccctgttgcgctcacccgtacgtgcccgcgcctctgctcggcgcgctggctgtgcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGCCGCGGCAGGCGGCCAGGGGCCTCCTGGCGCTCGGCGACTACTTCCAGC
                                                                       |  ||   |||   | ||  |   || |           |  ||   |||  ||||  | | | ||     || ||||           ||   ||  ||||||||| || |||||||||| |  |||||||||| ||||||||| |||||||||| ||||||||||||| ||||| ||||| ||||| || |||||||||||||
----------------------------------------------------------------------gtaaccaaaccaaaccaaaaccaaccgccaaaaactccgatcgcctcattgt-ctcattcat-catg-----gcatctg-----------ggacttgtgtgtgcagGCAGATCATCTCCGGCAGCAGACGCTGCAGGAGATGCACAGGATCCTGACGACGCGGCAGGCGGCGAGGGGGCTCCTCGCGCTGGGGGACTACTTCCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37387654|gb|CF631025.1|CF631025
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTGGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|148999147|gb|EE036060.2|EE036060
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|71433486|gb|DR814536.1|DR814536
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|148964848|gb|EE015712.2|EE015712
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|88751930|gb|DY536071.1|DY536071
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGATCGTCAATTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|74235597|gb|DT643511.1|DT643511
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|148930037|gb|EE285933.2|EE285933
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|149000176|gb|EE037313.2|EE037313
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: gi|76021608|gb|DT948778.1|DT948778
EST:     TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG                         GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctcacccgtacgtgcccgcgcctctgctcggcgcgctggctgtgcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGCCGCGGCAGGCGGCCAGGGGCCTCCTGGCGCTCGGCGACTACTTCCAGC
 cgctcac  putative branch site (score: 3)