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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaaaaaacttagtttcttgttttctccaattggtaagtgtttacttgaatatatcaattcatacagAGTCGTGATTGGATATGACGAAGGAACAATAATGATTAAGATTGGGCGTGAAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAA

Basic information

species Zea mays
transcript GRMZM2G443953_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 9
---------------------------------------------------------------------gtattaaaaaa-acttagtttcttgttttctccaattggtaagtgtttacttg-----aatatatca------attcatacagAGTCGTGATTGGATATGACGAAGGAACAATAATGATTAAGATTGGGCGTGAAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAA
|| | ||| | | || | || || || ||| | ||| || || || | ||||| |||| || |||||||| ||||| ||||||||||| ||| | || |||| || |||| |||||| ||||| ||||| | |||||| ||||| || ||| | ||
gtaagttttttctggatagaaattttgtaagtaatttcttaggccgttgaataatctgagtgggaaactgtgtcaaattgtgcctgaattatgaaattttcttatctttaactcttttctcataatcaaaattttcgggtgcattcaaacagGGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAG

upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 9
----------------------gtattaaaaaaacttagtttcttgttttctccaattggtaa---gtgtttact-----tgaatatatcaattcatacagAGTCGTGATTGGATATGACGAAGGAACAATAATGATTAAGATTGGGCGTGAAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAA
|| || | | || || | || || | | | | | |||| | | | ||||| || |||||||||||||| |||||||| || ||| |||| |||| || ||| ||||| ||||| ||||| || || || |||||||||||||| ||
agggcgtttagagtggctaggagttttttagggatcagtgttagcaccttattaaactgatcatacgggaccatcaacaacgaatgtgtttgctt-tacagGGTTGTGATTGGATATGATGAAGGAACCATCATGGTTAAACTTGGACGAGAAATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAG

upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 10
lower sequence: PP1S79_180V6.1 (Physcomitrella patens), 3'ss of exon 9
-----------------------------------------------------------------------------------------------------------------------------gtattaaaaaaacttagtttcttgtttt-ctccaattggtaagtgtttacttgaatatatcaat-tcatacagAGTCGTGATTGGATATGACGAAGGAACAATAATGATTAAGATTGGGCGTGAAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAA
|| | | | || | | || | | ||| | | | || || | | | | | | | ||| || | |||||||| || |||||||| || |||||||| || || || ||||| |||||||| |||||| | |||||||||||||||||||| |||
gcgagttctctaccaaaacgtttgaactcaacgtattgtatcttttaggcggtttaacaagttattcttaagacatatacaaggatatcatttaattttttcacctaaaacatcctgttacacactccttcattgatgtgtgtgtgtaattctgcgtttattcatttatatgtatgggattgtcttattattgtgcagGGTGGCAATTGGATACGATGAAGGAACTATCATGATTAAAATGGGAAAGGAGGCACCAGTTGCTAGCATGGATGGTAGTGGTAAAATCATATGGGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttgttttctccaattggtaagtgtttacttgaatatatcaattcatacagAGTCGTGATTGGATATGACGAAGGAACAATAATGATTAAGATTGGGCGTGAAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAA
                                    aatatatcaattcata  TA-rich tract