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gtgagtgtcttatgccaaaaccaagccttgatacatactttactactcggctgcagatgtgtttttatcacaagccttttgatgctagttccttggctggccaaaaaaaaaaaaaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG
species | Zea mays |
transcript | GRMZM2G437859_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTCC-TGACGGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATEST: gi|74238881|gb|DT646795.1|DT646795
genomic: TCCTCCTTGAC-GGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
EST: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATEST: gi|50337438|gb|CO532564.1|CO532564
genomic: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
EST: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATEST: gi|211379070|gb|FL028411.1|FL028411
genomic: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
EST: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATEST: gi|76287139|gb|DV026707.1|DV026707
genomic: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
EST: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATEST: gi|71310985|gb|DR791794.1|DR791794
genomic: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
EST: ATCCTCCTTGACGGGCTTTTTGGAACGGGGACTGGCTCCACTGTCTCAGT GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
genomic: ATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtct ... aaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCAT
cacaagccttttgatgctagttccttggctggccaaaaaaaaaaaaaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG
ttttgat putative branch site (score: 26)
aaaaaaaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcttatgccaaaaccaagccttgatacatactttactactcggctgcagatgtgtttttatcacaagccttttgatgctagttccttggctggccaaaaaaaaaaaaaaattgcagGGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG