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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgttttctgtgatagtttctgcatgtgttaatcaatctatgactatactgtcaaaatgtttcagGGTAGCAAAGCAAAGGTTGCGTGAAGCTACACAGCAGGCCGTTGATTACCTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGA

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os10g30610.2 (Oryza sativa), 3'ss of exon 9
gtaaattgttttctgtgatagtttctg----catgtgttaatcaatctatgactatactgtcaaaatg----tttcagGGTAGCAAAGCAAAGGTTGCGTGAAGCTACACAGCAGGCCGTTGATTACCTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGA
|||||||  ||||| |  |   |  |     | || || ||||| ||| | ||| ||| |||||||||    |||||||||| | |||||| |  | |||||||||||||  || || ||||||||| ||||||||||||| || || ||||||||||| |||||||||| ||||  |
gtaaattagtttctttattttctcttattttcttgggtgaatcagtctgtaactctacagtcaaaatgatattttcagGGTAACTAAGCAACGCCTACGTGAAGCTACACTACAAGCTGTTGATTACTTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagtttctgcatgtgttaatcaatctatgactatactgtcaaaatgtttcagGGTAGCAAAGCAAAGGTTGCGTGAAGCTACACAGCAGGCCGTTGATTACCTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGA
                tgttaat  putative branch site (score: 3)
                  ttaatcaat  TA-rich tract