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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgaaatagaacagaccttactgattaattacaagttccaacctctattccataagacagaaaggtgtgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGACGTAGCCAGGCAGCCAACCATGGCAGCACAGAAACCGAAAATGTTGAAG

Basic information

species Zea mays
transcript GRMZM2G428386_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149073035|gb|EE161302.2|EE161302
EST:     GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCT                         GTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
genomic: GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
EST: gi|149099463|gb|EE185503.2|EE185503
EST:     GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCT                         GTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
genomic: GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
EST: gi|94475269|gb|EB704227.1|EB704227
EST:     GCCAGTATCATGGTGGCAAAGGGTGCCATGTAATACACCGTGTTAATGCT                         GTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
genomic: GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
EST: gi|60351334|gb|DN218307.1|DN218307
EST:     GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCT                         GTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
genomic: GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
EST: gi|78125674|gb|DV544058.1|DV544058
EST:     GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCT                         GTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
genomic: GCCAGTATCATGGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA
EST: gi|76016592|gb|DT943762.1|DT943762
EST:     CCAGTATC-TCGGTGGCAAAGGGTGCCATGCAGTACACCGTGTTAATGCT                         GTCAAACTTGTTTCCATGGAGTAGGGACTCCGCCAAGATGGTCTTTGTAGA
genomic: CCAGTATCAT-GGTGGCAAAGGGTGCCATGTAGTACACCGTGTTAATGCTgcacgaaata ... tgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaattacaagttccaacctctattccataagacagaaaggtgtgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGACGTAGCCAGGCAGCCAACCATGGCAGCACAGAAACCGAAAATGTTGAAG
     attacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacgaaatagaacagaccttactgattaattacaagttccaacctctattccataagacagaaaggtgtgtagtacctGTCAAACTTGTATCCATGGAGTAGGGACTCTGCCAAGATGGTCTTTGTAGACGTAGCCAGGCAGCCAACCATGGCAGCACAGAAACCGAAAATGTTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG