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gtctgatatctactatgttcctttccattcattactacatccttttgttttccaacagatcttcataattaatttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTAAATTACTTGATAATGACAA
species | Zea mays |
transcript | GRMZM2G426275_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTAEST: gi|211529739|gb|FL258565.1|FL258565
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTAATCATTCTAGA-G ATGACATGGAGATTGCCC-GGAATTTTTCGACTACEST: gi|149082839|gb|EE172063.2|EE172063
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTAC
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG ATGACATGGAGATTGCCCCGGATTTTTTEST: gi|71439957|gb|DR821007.1|DR821007
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTT
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTAEST: gi|76285204|gb|DV024772.1|DV024772
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG ATGACATGGAGATTGCCCEST: gi|74244431|gb|DT652345.1|DT652345
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCC
EST: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
tcattactacatccttttgttttccaacagatcttcataattaatttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTAAATTACTTGATAATGACAA
aattaat putative branch site (score: 3)
tttctt CT-rich tract
atcttcataattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgatatctactatgttcctttccattcattactacatccttttgttttccaacagatcttcataattaatttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTAAATTACTTGATAATGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT