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...ggagaatcgatttgttggcttgttgctaacctaatacacaatctgtgtgaatcaacgattaaagaaatgccaatgaccacatttgtttctctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG
species | Zea mays |
transcript | GRMZM2G415846_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAG AGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATEST: gi|93283859|gb|EB676123.1|EB676123
genomic: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAGgtaagcctct ... ctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCAT
EST: CTTACTGATATTTTTATTGACAAGGACAAAAACTAGGATGCAATTACTAG AGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATEST: gi|21843184|gb|BQ703750.1|BQ703750
genomic: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAGgtaagcctct ... ctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCAT
EST: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAG AGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATEST: gi|26457293|gb|CA828876.1|CA828876
genomic: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAGgtaagcctct ... ctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCAT
EST: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAG AGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCAT
genomic: CTTACTGATATTTTTATTGACAAGGACAAAAACGAGGATGCAATTACTAGgtaagcctct ... ctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCAT
tgtgaatcaacgattaaagaaatgccaatgaccacatttgtttctctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG
ctctaaa putative branch site (score: 150)
tttgtttctct CT-rich tract
attaaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagaatcgatttgttggcttgttgctaacctaatacacaatctgtgtgaatcaacgattaaagaaatgccaatgaccacatttgtttctctaaatgcagAGTGTCTGCAGTTTCATATGTTGGAAGCTATCTGTCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG
- - - - - tttgttg
- - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - tacacaa
- - - - - - - - - - - - - - - - - - - - - - - gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa