Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttttggctgcactattattttgatggatttcattttgttggattacactgttatatagtttcactttcactatccattcatgcatttttttgtgcagCACAATTGTCAAATTTTCTGTACGTGAACTCTCTGAGGTTAAAAGGGTTGCAAGCCATCATCTTCGCCTTATAGGTTTCAAGCCATTGGATTGCTTGAAA

Basic information

species Zea mays
transcript GRMZM2G414496_T07
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285513|gb|DV025081.1|DV025081
EST:     CTTCAGGATGCACAGACACGTTTCCAGATGTACAATGA                         CACAATTGTCAAATTTTCTGTACGTGAACTCTCTGAGGTTAAAAGGGTTGC
genomic: CTTCAGGATGCACAGACACGTTTCCAGATGTACAATGAgtaagcacac ... ttttgtgcagCACAATTGTCAAATTTTCTGTACGTGAACTCTCTGAGGTTAAAAGGGTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacactgttatatagtttcactttcactatccattcatgcatttttttgtgcagCACAATTGTCAAATTTTCTGTACGTGAACTCTCTGAGGTTAAAAGGGTTGCAAGCCATCATCTTCGCCTTATAGGTTTCAAGCCATTGGATTGCTTGAAA
                                        cattttttt  CT-rich tract
        ttatatagttt  TA-rich tract