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gtgcactcaaagctgtctcatacagtggtattatgttcattttgtcacatgacttatttttgtgtgctgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCTTTCAGGGAGTTTTCTTGGGATG
species | Zea mays |
transcript | GRMZM2G412899_T05 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCCAACATATGCATGGGGATTTCTAATCTATCAG GATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCEST: gi|78110186|gb|DV528601.1|DV528601
genomic: CCTTGCCAACATATGCATGGGGATTTCTAATCTATCAGgtgcactcaa ... tgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTC
EST: GGGGA-TTCTAATCTATCAG GATCAATGGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCEST: gi|148974491|gb|EE025274.2|EE025274
genomic: GGGGATTTCTAATCTATCAGgtgcactcaa ... tgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTC
EST: ATGCATGGGGATTTCTAATCTATCAG GATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCEST: gi|71766867|gb|DR964804.1|DR964804
genomic: ATGCATGGGGATTTCTAATCTATCAGgtgcactcaa ... tgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTC
EST: GGTGCCCTCTAACCTTGCCAACATATGCATGGGGATTTCTAATCTATCAG GATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTC
genomic: GGTGCCCTCTAACCTTGCCAACATATGCATGGGGATTTCTAATCTATCAGgtgcactcaa ... tgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTC
cagtggtattatgttcattttgtcacatgacttatttttgtgtgctgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCTTTCAGGGAGTTTTCTTGGGATG
ctgtctt CT-rich tract
tattatgttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcactcaaagctgtctcatacagtggtattatgttcattttgtcacatgacttatttttgtgtgctgtcttacagGATCAATTGTAGCAATGCTTCTAATGGACAAGCTAGGTAGAAAAGTGCTTCTTTCAGGGAGTTTTCTTGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT