Sequence
atgc intronic sequence ATGC exonic sequencegtaataagacatgtgttacattctgtctttttctttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 3'ss of exon 10
gtaataagacatgtgttacattc-tgtctttttctttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
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---gtatgagattatttgaatgagcatttgtgtctgtctccaaatgaattgggcacttacatcctttctcatgcagATGGGTACTTCTTGAAGTACTGGACAAAGTTTCTCCAGGATCTGTCAATTGGAAGCTGGCCTCGAAACCTCCAATTAAACTACCATTCAGGAAATTGGAG
upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA02G47800.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------gtaataagacatgtgttacattctgtctttttctttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
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gtaagttttccactgttcagttggctcatcatctgcgtcttccattttcttatcattttgtttttaacttgtctttaaaaaatttccttgatcttaactactggttatgatggtccttatttcctttactacagATGGGTTCTATTAGAAGTTCTTGACAAGGTTTCAGCTGGATCTGTCAATTGGAAGCTGGCCACAAAGCCTCCTATAAAGATGCCGTTTCGGAAAGTTGAG
upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 9
---------------------gtaataagacatgtgttacattctgtctttttc-----tttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
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aaataatttttgaattggaaagcagaaacaattttatggaacttgatattttgcaagcttttccctagctttcttgatccatagtttctcatgt-atgcagATGGATACTCTTGGAAGTGCTTGACAAGGTTTCTCCAGGATCTGTTAACTGGAAGCGTGCATCAAAACCTCCCATTAAGATGCCATTCAGAAAAGTAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74239931|gb|DT647845.1|DT647845EST: CTTGGGGTTGAATCATATGTGAACAATGTCTTCGAAGATGTTCGCAACGG ATGGGTACTTCTTGAAGTGCTTGACAGGGTGTCTCATGGATCTGTCAATTG
genomic: CTTGGGGTTGAATCATATGTGAACAATGTCTTCGAAGATGTTCGCAACGGgtaataagac ... tttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctgtctttttctttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
tccatttt CT-rich tract
ttattaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataagacatgtgttacattctgtctttttctttctctaaatgatctggttattaatgtccattttgatgcagATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG