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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaaatacgctaaaaatatcgctgttagaacaggcaaattgcagttacctgaaggctgctgctttctcggtcttttctaattgttctttatcatgcagTTTATTGAAGTTGGTACAATGGTTTCCCCAACCATTTATGCTCGACGTTGCCTGTCATATCTGATGAATGGCATGCCACAGGAGGCATTGAATGATGCAA

Basic information

species Zea mays
transcript GRMZM2G382104_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382104_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 3'ss of exon 10
-----ggttaaatacgctaaaaatatcgctgttagaacaggcaaattgcagttacctgaaggctgctgctttctcggtcttttctaattgttctttatcatgcagTTTATTGAAGTTGGTACAATGGTTTCCCCAACCATTTATGCTCGACGTTGCCTGTCATATCTGATGAATGGCATGCCACAGGAGGCATTGAATGATGCAA
     |  | | ||  ||  ||| | |     |  |      |      | ||   | |      | ||| | |  | |||| ||     ||  || | |||||||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||||||||||||||||| || | || |  | ||  | | |||||| |
ggaccgtgtgactat-ctgtaaacaccatcagtccattgaaaaggaaaaactt--ttaatcctcacagctatttttgactttgctc-ccatttgttgt-atgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCCTGTCATATCTGATGAATGACAAGGCAGAACAAGCTCTCAGTGATGCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacctgaaggctgctgctttctcggtcttttctaattgttctttatcatgcagTTTATTGAAGTTGGTACAATGGTTTCCCCAACCATTTATGCTCGACGTTGCCTGTCATATCTGATGAATGGCATGCCACAGGAGGCATTGAATGATGCAA
                               ttctaat  putative branch site (score: 2)
                                     ttgttcttt  CT-rich tract
                                  taattgttctttat  TA-rich tract