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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaggcagtttgttacaatgacttcaggatcttctgctttttatgacttccactttcttcattgatggtcttgcagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCCACCATGGTCGCAGGGCTCTCTTTCTTTGACCACAGTGTAGCTTCCCAGA

Basic information

species Zea mays
transcript GRMZM2G374989_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374989_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 3'ss of exon 6
gtaattaggcagtttgttacaat-----gacttca----------ggatcttctgctttttatgacttccactt--tcttcattgatggtcttgcagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCCACCATGGTCGCAGGGCTCTCTTTCTTTGACCACAGTGTAGCTTCCCAGA
||  | | ||||||| ||   ||     ||  | |           ||| |  |   | ||   | ||  |  |  | |||  |  || | ||||||||| ||||||| |||||| ||  | | |||||  ||||||||||||||||    ||||| || ||||||| ||||||||| || ||||||||||| ||  
gttgtgatgcagtttattttgattccaggatctaatgtaaaatgtagatatattcgatgttggaattttgatgtgcttttcgctattgattttgcagGATTTGTTTTCTGTCCCTCCACCATACATATTTTTGGCTATTGTGCCTGCTGTAATGGTTGCCGGGCTCTATTTCTTTGATCATAGTGTAGCTTCACAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaggatcttctgctttttatgacttccactttcttcattgatggtcttgcagGATCTGTTTTCAGTCCCTACAGTACATATATTCCTGGCTATTGTGCCTGCCACCATGGTCGCAGGGCTCTCTTTCTTTGACCACAGTGTAGCTTCCCAGA
                                      cattgat  putative branch site (score: 4)
                tttttatga  TA-rich tract