1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcttgacatggtctgaatccaaaatcgattgaattcttttgacctatcttaatatatgtatgtatgtatgtatgttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACTACCCTGATGGAGCCTTTGATCCAGTTCTACCACCTCAGAAG
species | Zea mays |
transcript | GRMZM2G374779_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|5740401|gb|AI948091.1|AI948091
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: ACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCCCGAGAAACGGCATGGTTTGGTTACEST: gi|71426905|gb|DR807955.1|DR807955
genomic: ACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|40335885|gb|CK369955.1|CK369955
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: GAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|60353728|gb|DN220701.1|DN220701
genomic: GAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|18175059|gb|BM350447.1|BM350447
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|91871940|gb|EB401897.1|EB401897
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|71331117|gb|DR802384.1|DR802384
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|37387680|gb|CF631038.1|CF631038
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|71312843|gb|DR792950.1|DR792950
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|211181803|gb|FL472365.1|FL472365
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|32909020|gb|CF013832.1|CF013832
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: AGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|84969821|gb|DW468238.1|DW468238
genomic: AGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACEST: gi|18167192|gb|BM337031.1|BM337031
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
EST: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATG TTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
genomic: CCACCTACAAGGAAAGATTCAGTAGCTTAGAGAATTTGGTTCTGATTATGgtaagcttga ... ttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTAC
tgaattcttttgacctatcttaatatatgtatgtatgtatgtatgttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACTACCCTGATGGAGCCTTTGATCCAGTTCTACCACCTCAGAAG
tcttaat putative branch site (score: 3)
tatcttaatatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgacatggtctgaatccaaaatcgattgaattcttttgacctatcttaatatatgtatgtatgtatgtatgttatttgcagTTTCAGGATGATGCAGTCCTGATACCACGAGAAACGGCATGGTTTGGTTACTACCCTGATGGAGCCTTTGATCCAGTTCTACCACCTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA