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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcaaattttaaactaatacatgatgtgaagtgtaactcaaaacgagtaaggaagctgtgaaaacgggacgattgaacttatttcgaaccacaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGCTATACAGTATCCTCCGGTTCGAGCCATCAGAACGTCTGACAGCGCAAG

Basic information

species Zea mays
transcript GRMZM2G366935_T09
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426269|gb|DR807319.1|DR807319
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|71766680|gb|DR964617.1|DR964617
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|76915207|gb|DV165881.1|DV165881
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|71760328|gb|DR958265.1|DR958265
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|24765506|gb|CA400665.1|CA400665
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCCGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|5607698|gb|AI901365.1|AI901365
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|166490845|gb|EG161148.1|EG161148
EST:     AGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGC
genomic: AGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGC
EST: gi|74242829|gb|DT650743.1|DT650743
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: gi|71775054|gb|DR972932.1|DR972932
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaaggaagctgtgaaaacgggacgattgaacttatttcgaaccacaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGCTATACAGTATCCTCCGGTTCGAGCCATCAGAACGTCTGACAGCGCAAG
                              aacttattt  TA-rich tract