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...ctatgaacacttttaatctttttcaacaccgtaatgcataaaattaattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
species | Zea mays |
transcript | GRMZM2G365035_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|211142539|gb|FL467000.1|FL467000
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|32840606|gb|CD980287.1|CD980287
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTCTGAGGAGTTTGTTGCTGCAEST: gi|76017952|gb|DT945122.1|DT945122
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|149043308|gb|EE047371.2|EE047371
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|60345110|gb|DN212083.1|DN212083
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|22489585|gb|BU049508.1|BU049508
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|211516679|gb|FL422119.1|FL422119
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|76284446|gb|DV024014.1|DV024014
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|87153749|gb|DY398538.1|DY398538
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|32935092|gb|CF039904.1|CF039904
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGCCAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCCGCAEST: gi|18384244|gb|BM417443.1|BM417443
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|37388728|gb|CF631576.1|CF631576
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|33091766|gb|CF051760.1|CF051760
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|22489749|gb|BU049672.1|BU049672
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|32840607|gb|CD980288.1|CD980288
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|45567561|gb|CK985631.1|CK985631
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAEST: gi|149102041|gb|EE188040.2|EE188040
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
aattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
aattaat putative branch site (score: 81)
ttccatt putative PPT
agataaataaattgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatgaacacttttaatctttttcaacaccgtaatgcataaaattaattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA