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gtgagaggaggcccttgtctgttgcatttctgatacaatgatgtctttgagttgaacgggttttcatgtgtttgtgttttccccccttaaaaaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACTCCCAGTTGAGTGATGATGGATCATACTCTGATGCCCAGGACAGCTATG
species | Zea mays |
transcript | GRMZM2G363460_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|71312716|gb|DR792886.1|DR792886
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: ACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|60344992|gb|DN211965.1|DN211965
genomic: ACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: AGCCGATGTCCCCTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|78075299|gb|DV503733.1|DV503733
genomic: AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: ATAGGTCTTTTGGCAGTAAG CCATGGGAGATGCATTTGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|110517843|gb|EE022430.1|EE022430
genomic: ATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|20301072|gb|BQ164015.1|BQ164015
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCA-GCAGTATTCACAACAGAGGCCTGGTTATGGATCCAAEST: gi|76281031|gb|DV020599.1|DV020599
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTC-GTATTCACAACAGAGGCCTGGTTATGGATCCAA
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|31355282|gb|CD439639.1|CD439639
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|76912797|gb|DV164885.1|DV164885
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACEST: gi|78109255|gb|DV527671.1|DV527671
genomic: AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
ttgagttgaacgggttttcatgtgtttgtgttttccccccttaaaaaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACTCCCAGTTGAGTGATGATGGATCATACTCTGATGCCCAGGACAGCTATG
ttaaaaaaattgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaggaggcccttgtctgttgcatttctgatacaatgatgtctttgagttgaacgggttttcatgtgtttgtgttttccccccttaaaaaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAACTCCCAGTTGAGTGATGATGGATCATACTCTGATGCCCAGGACAGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA