1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcccggttatgattgtgatgtcctgttatttattgccaagcatgtgctgttgaagatgtaaatcttactgtatctgcttatcttttttgttgggcacagGTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAGCAGCAGGATGCCCTACCGAAGCATGCTAATCCTGTGCTGCTCGTATCGG
species | Zea mays |
transcript | GRMZM2G361605_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTCCAGTGACCAGAAGTTTGACCATATCGACATATCTGAGAAACAGAAG GTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAGEST: gi|67025328|gb|CO454077.1|CO454077
genomic: CGTCCAGTGACCAGAAGTTTGACCATATCGACATATCTGAGAAACAGAAGgtgggtcaga ... ttgggcacagGTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAG
EST: CGTCCAGTGACCAGAA-TTTGACCATATCGACATATCTGAGAAACAGAAG GTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAG
genomic: CGTCCAGTGACCAGAAGTTTGACCATATCGACATATCTGAGAAACAGAAGgtgggtcaga ... ttgggcacagGTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAG
tgctgttgaagatgtaaatcttactgtatctgcttatcttttttgttgggcacagGTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAGCAGCAGGATGCCCTACCGAAGCATGCTAATCCTGTGCTGCTCGTATCGG
atcttac putative branch site (score: 3)
cttatcttttttgtt putative PPT
ttatcttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccggttatgattgtgatgtcctgttatttattgccaagcatgtgctgttgaagatgtaaatcttactgtatctgcttatcttttttgttgggcacagGTCATCAATGAATGCTCTGAAGCAGAGAACTGGTTAAGAGAGAGGAAACAGCAGCAGGATGCCCTACCGAAGCATGCTAATCCTGTGCTGCTCGTATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - aagcatg
- - - - - - - - - - - - - - - - - - - - - - - gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg