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gtatagtttccaagttgctggcaacaatctcctcacgaattatgtttatctgtaccttataaatttcacgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACACGTTTCTTTGCTACAA
species | Zea mays |
transcript | GRMZM2G351582_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACAEST: gi|30306974|gb|CD001647.1|CD001647
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: TGAAG-TGCTGCAGCA-TG-GTAGATATTCAGCACCAGAAGAG G-TGATACTTTACCATCAACATGTGGAGCCTG-GG-ACAGAATGCGTCACAEST: gi|78085694|gb|DV514087.1|DV514087
genomic: TGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACAEST: gi|31611962|gb|CD568584.1|CD568584
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACAEST: gi|67020485|gb|CO449234.1|CO449234
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACAEST: gi|29946582|gb|CB816222.1|CB816222
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTG-GTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATG-GGAGCCTG-GGAACAGAATGCGTCACAEST: gi|28568977|gb|CB280852.1|CB280852
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACAEST: gi|211367140|gb|FL432365.1|FL432365
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCMCCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCMCAEST: gi|60357973|gb|DN224946.1|DN224946
genomic: ACCCTGATGAAGTTGCTGCAGCATTGTGTAGATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
EST: GATATTCAGCACCAGAAGAG GTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
genomic: GATATTCAGCACCAGAAGAGgtatagtttc ... acgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACA
aacaatctcctcacgaattatgtttatctgtaccttataaatttcacgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACACGTTTCTTTGCTACAA
tcctcac putative branch site (score: 146)
aattatgtttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtttccaagttgctggcaacaatctcctcacgaattatgtttatctgtaccttataaatttcacgtgaacagGTTGATACTTTACCATCAACATGTGGAGCCTGTGGAACAGAATGCGTCACACGTTTCTTTGCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG