1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgtcctgcttttagtcactgtagtcgtttcatgtttggatttcatctgccattataacagtttgacattaaccaacctcctcattatattgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTCCCTTTGAGTATGTCTGAGGTTGTAATTAGTCATT
species | Zea mays |
transcript | GRMZM2G351417_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAATAGAAACAAGCTACTTCGNNNNNNNGCTGGATTCAAGATTGACAAAG AGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGAAATAT-CGEST: gi|60401041|gb|DN233848.1|DN233848
genomic: CAATAGAAACAAGCTACTTCGTTTTTTTGCTGGATTCAAGATTGACAAAGgtactatacc ... tgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTC-
EST: CAATAGAAACAAGCTACTTCGNNNNNNNGCTGGATTCAAGATTGACAAAG AGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGAAATAT-CGEST: gi|60359357|gb|DN226330.1|DN226330
genomic: CAATAGAAACAAGCTACTTCGTTTTTTTGCTGGATTCAAGATTGACAAAGgtactatacc ... tgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTC-
EST: CAATAGAAACAAGCTACTTCGNNNNNNNGCTGGATTCAAGATTGACAAAG AGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGAAATAT-CG
genomic: CAATAGAAACAAGCTACTTCGTTTTTTTGCTGGATTCAAGATTGACAAAGgtactatacc ... tgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTC-
tctgccattataacagtttgacattaaccaacctcctcattatattgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTCCCTTTGAGTATGTCTGAGGTTGTAATTAGTCATT
cattaac putative branch site (score: 2)
attatattgtgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcctgcttttagtcactgtagtcgtttcatgtttggatttcatctgccattataacagtttgacattaaccaacctcctcattatattgtgaatcagAGGATGAACAGTTTGAAGCAGACAAGGAGCATGTCATAAAAGATTTTTTCCCTTTGAGTATGTCTGAGGTTGTAATTAGTCATT
- - cctgctt
- - - - - - - - cactgta
- - - - - - - - - - - - - - - catgttt
- - - - - - - - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt