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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattactctcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAGTTGCGTTTGGTTCGCCGTGGAAATCTAAACACATCACTTCTCCCTGTGC

Basic information

species Zea mays
transcript GRMZM2G350818_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G350818_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 3'ss of exon 15
gttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattact------ctcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAGTTGCGTTTGGTTCGCCGTGGAAATCTAAACACATCACTTCTCCCTGTGC
||| |||||  | |||||||   ||||||| | |  || | |  ||| | | ||| | | | | ||| ||          ||||| ||| ||| || ||||| |||||||| || ||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||  |  || |||| ||||| |
gtttattctgaaacatttcaagctgtactgga-tcactaagt-gaacaattcattttattagcatataacatgaacatatttttacagGGTGTACCTTCATCAATATGGCACCGCCTTGTTGCTGGATTGAACGCCCAGTTGCGTTTGGCTCGTCGTGGAAATCTAAAAGCCACATTTCTTCCTGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015716|gb|CO444465.1|CO444465
EST:     CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAG                         GCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
EST: gi|31348714|gb|CD433071.1|CD433071
EST:     CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAG                         GCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
EST: gi|211366115|gb|FL398815.1|FL398815
EST:     CACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTYAG                         GCTGTG-CATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaattgctgaattaaaccaattattctctcaacttattactctcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAGTTGCGTTTGGTTCGCCGTGGAAATCTAAACACATCACTTCTCCCTGTGC
                                   cttattactctctttt  CT-rich tract
            aattaaaccaattatt  TA-rich tract