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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgacagctattgaatatatcgtattatacacagccagcaaacttcaaattaaactctgtttttttcagAGCTGTGGAATTCTTGAAACAGGTCCTTGGAACTTACAGCTTAAGATATATTAAGGCTTCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTCGTC

Basic information

species Zea mays
transcript GRMZM2G350001_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G350001_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 3'ss of exon 4
gtaagttgacagctattgaatatatcgtattatacacagccagcaaacttca---aattaaactctgttttt----ttcagAGCTGTGGAATTCTTGAAACAGGTCCTTGGAACTTACAGCTTAAGATATATTAAGGCTTCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTCGTC
||||||| |   ||||  |  || |  || |||| | ||    |||   | |   || |||| |   |||||    || || ||| | |||||||| ||| | |||||||   | |||  ||| |  |||||  |||||||||| ||||||||||| ||||||||||| |||||||| || 
gtaagtt-atgtctatgaagcatct--taatatagaaagatgacaatgcttatataactaaatttattttttggcttttagGGCTATTGAATTCTTCAAAGAAGTCCTTGAGGCATACTACTTGAAGTATATGGAGGCTTCCCGCATGCTTGGTGATCAATTAGCACTGGCATGGGTTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcgtattatacacagccagcaaacttcaaattaaactctgtttttttcagAGCTGTGGAATTCTTGAAACAGGTCCTTGGAACTTACAGCTTAAGATATATTAAGGCTTCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTCGTC
                                        ctctgtttttttc  CT-rich tract
                         aaacttcaaattaaa  TA-rich tract