Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactctgactgatcttcttacgctttgcattgaggaaggagctcttctggacggttggataacagagccgttctaatgtgttttcagGGTGAACCCGTCCAAGACGCCCGTGCGTCCCCGCGACCCTCGCCAGCTGATGTCATCCTAGGTATACATACAGGAGGTGCTGACAATGGCACTGCTCATA

Basic information

species Zea mays
transcript GRMZM2G349794_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349794_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 9
gtaaaactctgactgatcttcttacgctttgcattgaggaaggagctcttctggacggttggataacagagccgttctaatgtgt-tttcagGGTGAACCCGTCCAAGACGCCCGTGCGTCCCCGCGACCCTCGCCAGCTGATGTCATCCTAGGTATACATACAGGAGGTGCTGACAATGGCACTGCTCATA---
|||||  | ||     ||   |   |       |||   ||  |  |  | |  ||||    || || ||| ||   |    | | ||||||||||| ||| || ||||| |||||||||||||| |  |||||||||||||||   |    | | ||  |||||||||||||||   |||||||||| |||   
gtaaagatgtggtctttcacatattgacagcttttgtacaaacaagttattt--acgg--aaatgactgaggcggctttgcttatatttcagGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGA---TGGCACTGCTTATATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaaggagctcttctggacggttggataacagagccgttctaatgtgttttcagGGTGAACCCGTCCAAGACGCCCGTGCGTCCCCGCGACCCTCGCCAGCTGATGTCATCCTAGGTATACATACAGGAGGTGCTGACAATGGCACTGCTCATA
                                      ttctaat  putative branch site (score: 2)
                                              tgttttc  CT-rich tract
                                      ttctaat  TA-rich tract