1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attgtagtctcaatgtcagtattgtgctgtttgctttgttttcatcgcttcctagataaatgaattctgttttgaagcctgtcctgtttggatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTATCTAGTTCTAGGAGCATGCATAGGTCACCTGAACAGAACTACAGCAACA
species | Zea mays |
transcript | GRMZM2G348697_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTTCAAAACAA-TGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAG CGTGAGGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTAEST: gi|18649492|gb|BM498311.1|BM498311
genomic: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAGgtaatgataa ... gatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
EST: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAG CGTGAGGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTAEST: gi|18649402|gb|BM498221.1|BM498221
genomic: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAGgtaatgataa ... gatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
EST: TGTTCAAAACAA-TGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAG CGTGAGGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTAEST: gi|18648820|gb|BM497639.1|BM497639
genomic: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAGgtaatgataa ... gatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
EST: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAG CGTGAGGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTAEST: gi|18649243|gb|BM498062.1|BM498062
genomic: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAGgtaatgataa ... gatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
EST: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAG CGTGAGGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
genomic: TGTTCAAAACAATTGGGGAGGCATATAATGTTCTTTCTGACCCGGCCAAGgtaatgataa ... gatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTA
cgcttcctagataaatgaattctgttttgaagcctgtcctgtttggatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTATCTAGTTCTAGGAGCATGCATAGGTCACCTGAACAGAACTACAGCAACA
tagataaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtagtctcaatgtcagtattgtgctgtttgctttgttttcatcgcttcctagataaatgaattctgttttgaagcctgtcctgtttggatttcgcagCGTGAAGAGTACAACTTTGAAGAGGATCTAAGAAATGCCAGGAGGAGAGTATCTAGTTCTAGGAGCATGCATAGGTCACCTGAACAGAACTACAGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcctg