Sequence
atgc intronic sequence ATGC exonic sequencegtaagacttccatttctgtttctgcataatgttattgatcacagtatgcaattgtgtcagcaaagtcagcaataagttattattcaccaaatatttgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 3'ss of exon 10
gtaag-----acttccatttctgtttct--gcataatgttattgatcacagtatgcaattgtgtcagcaaagtcagcaataagttattattcaccaaatatttgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
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gtaagcttgtactcatactattctttcatagcttgctgatatacattaaggcatgcatttctct-gttaggatcagtaccaacataacattgataaaacatttgttgagcagGAACTCATAGATGTTGAGGGTGATGGAATGGCAGATATGGCGTTCCGTTGCATTCAAGAAATGGACATCGACAACCGGATGACA
upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G05780.1 (Glycine max), 3'ss of exon 10
gtaagacttccatttctgtttctgcataatgttattgatcacagtatgcaattgtgtcagcaaagtcagcaataagttattattcaccaaatatttg----tttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
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-------catgactaaagtattttcacgatgtgactctgcaattctagctagtgtgtaagtgtaatttgc--tggcttatgattgcatgactttttcctcttttcacagGAACTTATAGATGTAGAAGGTGATGGAATGGCTGACATGGTTTTTCGCTGCATTCAGGAAATGGATATTGACAACCGGATGATG
upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 10
lower sequence: AT3G27000.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagacttccatttctgtttctgcataatgttattgatcacagtatgcaattgtgtcagcaaagtcagcaataagttattattcaccaaatatttgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
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gtaa-accttcatcgcgtcctctgc-taatttctcttttggaatagtttcaaccctccaagaatctcg-----aggctgatcacaaccaaatatttttt---cagGAACTCATTGATGTTGAAGGTGATGGAATGGCAGACATGGTTTTCCGATGTATTCAAGAAATGGATATTGATAACCGCATGATG
upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 3'ss of exon 10
gtaagacttccatttctgtttctgcataatgttattgatcacagtatgcaattgtgtcagcaa-----agtcagcaataagttattattcaccaaatatttgttta----acagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
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--------------ttttatcctgtaaggctgtaaccatgaaggcatgcagtcacagtaatagttttgaataggtagagaattgtgggtgtttagatgttcttttttcttgcagGAACTCATAGATGTTGAAGGTGATGGAATGGCAGACATGGTATTTCGCTGTATCCAAGAAATGGATATTGACAATCGTATGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211077208|gb|FK957144.1|FK957144EST: TTAAAGTAGGCACTGAACGATTTCAAGCTCCTGAAGCTCTTTTCACTCCT GAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGC
genomic: TTAAAGTAGGCACTGAACGATTTCAAGCTCCTGAAGCTCTTTTCACTCCTgtaagacttc ... tgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtgtcagcaaagtcagcaataagttattattcaccaaatatttgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
tttgttt CT-rich tract
aataagttattattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacttccatttctgtttctgcataatgttattgatcacagtatgcaattgtgtcagcaaagtcagcaataagttattattcaccaaatatttgtttaacagGAACTGATAGATGTTGAAGGTGATGGGATGGCGGATATGGCATTCCGTTGCATTCAGGAAATGGATATTGACAACAGGATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG