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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaatatttttctgtcccatacatggaatttatcctgcttttctctgtgcttagcttcctgttatacatctcagattattttctggtttgggtttcacagAATCCTTCAGCACCTGCAGCAGAAAGCAATCAGCTGCCTAGGGATACTGATCCATCACCTGGGCAGCCTTTGCAACCTGGAATGTCATCATCTGGTGTTG

Basic information

species Zea mays
transcript GRMZM2G340749_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340749_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g44900.1 (Oryza sativa), 3'ss of exon 12
-----taaatatttttctgtcccatacatggaatttatcctgcttttctctgtgcttagcttcctgttatacatctcagattattttctggtttgggtttcacagAATCCTTCAGCACCTGCAGCAGAAAGCAATCAGCTGCCTAGGGATACTGATCCATCACCTGGGCAGCCTTTGCAACCTGGAATGTCATCATCTGGTGTTG
      |   || |||| |    ||  |||||| | ||| |  |||| ||  |  || ||||       || || |  ||  |  | ||| | | | |||| |||||||| |||||| |   | ||||| | | ||| ||  |||| ||  |||||| | || |||||||||||||||||||||| |||||||||||||||||||
taggagagcaatgtttcagattaatg-atggaagt-atcgtagttttttc-attttttgcttaactcgttatattt--gaacacctactgttcttgttttctcagAATCCGTCAGCATCCATAACAGAAGGTACTCAACTATCTAGAGACCCTGATCTACCAGCTGGGCAGCCTTTGCAACCTGGCATGTCATCATCTGGTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67024274|gb|CO453023.1|CO453023
EST:     CAGGAGCAAATAAACAAACAAGTGAAGATGACACAAAGATTCCATATTCG                         AATCCTTCAGCACCTGCAGCAGAAAGCAATCAGCTGCCTAGGGATACTGAT
genomic: CAGGAGCAAATAAACAAACAAGTGAAGATGACACAAAGATTCCATATTCGgtatacaagc ... ggtttcacagAATCCTTCAGCACCTGCAGCAGAAAGCAATCAGCTGCCTAGGGATACTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcttagcttcctgttatacatctcagattattttctggtttgggtttcacagAATCCTTCAGCACCTGCAGCAGAAAGCAATCAGCTGCCTAGGGATACTGATCCATCACCTGGGCAGCCTTTGCAACCTGGAATGTCATCATCTGGTGTTG
                           agattatttt  TA-rich tract