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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtacctttcagcaagttggtcgtctatgggagcatttccttgttgagtctcagatacatgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCATGTAAGCATTCTCTACTTCTGCATTGAACCTGTTG

Basic information

species Zea mays
transcript GRMZM2G330772_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G330772_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os07g07000.1 (Oryza sativa), 3'ss of exon 10
atgtacctttcagca-----agttggtcgtctatgggagcatttccttgt-----tgagtctcagata-catgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCATGTAAGCATTCTCTACTTCTGCATTGAACCTGTTG
 ||    |||   ||     | ||  |     ||  ||     ||| | |     ||||    || ||   |||||  |||  ||||||| ||||||||   |  || |||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| ||||| |||                                  
gtgacttttttgacataagcacttatttactaatctgatttaatccatatgcttgtgagctcgagttaatgtgcctaattactccattcc-ttgttttt---gccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACAACATAGAGACACAT----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60359751|gb|DN226724.1|DN226724
EST:     GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG                         ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCATTGAGACATGATC
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtctcagatacatgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCATGTAAGCATTCTCTACTTCTGCATTGAACCTGTTG
                              ttcccttgttttttgt  CT-rich tract
                                   ttgtttttt  TA-rich tract