1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgtacctttcagcaagttggtcgtctatgggagcatttccttgttgagtctcagatacatgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCAT
species | Zea mays |
transcript | GRMZM2G330772_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|211421982|gb|FL437726.1|FL437726
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|211224343|gb|FL202744.1|FL202744
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|211202912|gb|FL437151.1|FL437151
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|211495566|gb|FL127190.1|FL127190
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|211226398|gb|FL202747.1|FL202747
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|60359751|gb|DN226724.1|DN226724
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCATTGAGACATGATCEST: gi|211224342|gb|FL202743.1|FL202743
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|67020224|gb|CO448973.1|CO448973
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|60395077|gb|DN227946.1|DN227946
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|67020710|gb|CO449459.1|CO449459
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACEST: gi|9732911|gb|BE511663.1|BE511663
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAAC
tgagtctcagatacatgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCAT
ttcccttgttttttgt CT-rich tract
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtacctttcagcaagttggtcgtctatgggagcatttccttgttgagtctcagatacatgcctctttataccattcccttgttttttgtgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATCAACAACATCGAGACCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - ttcagca
- - - - - - - - - - - - - - - - - - - - -ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atacatg