Sequence
atgc intronic sequence ATGC exonic sequence...agtatgggaatctttatattcccaatctattcgatgtggagatttcaacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 2
-----------------------agtatgggaatctttatattcccaatctattcgatgtggagatttcaacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
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acttggtcttattatatatttgcctttccaggatatgt-tgtttactctcttgttgctttgtattttcctactgt-gattgttcatggatactgttttacagATATTTGTAATAACATTGCAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAACTTGACAAGCTCATACTAACTCTAT---------------------
upper sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 9
--agtatgggaatctttatattcccaatctattcgatgtggagatttcaacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
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gccttttcaggatattt-tgtttaccctcttgttgctttttattttcctactgt-gattgttcatggatactgttttacagatatttgaaataacattgcagGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGACAAGCTCATACTAACTCTATTTGCAACTCTCTTCGTGATGT
upper sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 7
-agtatgggaatcttta-tattcccaatctattcgatgtggagatttcaacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
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tgctcttgtattctttggtatgtctctcttgctccattc--atctcttatgtttacacttcttgtttaatgtggggcttgtggctgctacccatgattgcagGTTATGATGAATGCCATGAATGTTCCTTCCAAAAGGAGTACTTTAGAAAGGAAACTTGACAAACTTATACTGGCTCTTTTCGGTGGCCTGTTCCTCATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
ttttgat putative branch site (score: 4)
tttcaaaatttattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtatgggaatctttatattcccaatctattcgatgtggagatttcaacttttgattctcttcaactttcaaaatttattcatgtagaaaattgttgcagGTTATGATGAATTCCATGAATGTTCCCTCAAAAAGAAGTACATTGGAAAAAAAGCTAGACAAGCTTATCCTTGCTCTTTTTGCAACCCTCTTTACAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - -cgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg