1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttcattttctgtgctcatgtagctgtgtttagtgcctactgtcttaactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA
species | Zea mays |
transcript | GRMZM2G324540_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCEST: gi|60400048|gb|DN232855.1|DN232855
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
EST: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCEST: gi|60337485|gb|DN204458.1|DN204458
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
EST: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
aactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA
ttttctttttgtattc CT-rich tract
atgttattaaaaagct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattttctgtgctcatgtagctgtgtttagtgcctactgtcttaactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA
ttcattt
- - - - -tgtgctc
- - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtta