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gcaagagatttatgttccagcgacagaagttaattatgccctcgaaatcatcctgtggtgaatggaatcagtaatggacgtacttcaccctctattcctctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATGGCTGCTCAGTGGCAGGAACCGAGTGTTCTGTAGGTGGTGCTTCAGAGGC
species | Zea mays |
transcript | GRMZM2G323622_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCATCAACAGATATAAATGACACTAGCCAACAAATCCGACGACTATCAN GGGCTGCTGGATCANGCGAGGCCGAATGCNAAAATAACATGTCTGATGATGEST: gi|38687290|gb|CK144321.1|CK144321
genomic: TTCATCAACAGATATAAATGACAGTAGCCAACAGATCCGACGACTATCAGgcaagagatt ... tctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATG
EST: TTCATCAACAGATATAAATGACAGTAGCCAACAGATCCGACGACTATCAG GGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATGEST: gi|211413818|gb|FL421627.1|FL421627
genomic: TTCATCAACAGATATAAATGACAGTAGCCAACAGATCCGACGACTATCAGgcaagagatt ... tctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATG
EST: TTCATCAACAGATATAAATGACACTAGCCAACAAATCCGACGACTATCAG GGGCTGCTGGATCAGGCGAGGCCGAATGCGAAG
genomic: TTCATCAACAGATATAAATGACAGTAGCCAACAGATCCGACGACTATCAGgcaagagatt ... tctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAG
tgtggtgaatggaatcagtaatggacgtacttcaccctctattcctctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATGGCTGCTCAGTGGCAGGAACCGAGTGTTCTGTAGGTGGTGCTTCAGAGGC
ctctaat putative branch site (score: 100)
tacttcaccctctatt CT-rich tract
tctaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagagatttatgttccagcgacagaagttaattatgccctcgaaatcatcctgtggtgaatggaatcagtaatggacgtacttcaccctctattcctctaatatagGGGCTGCTGGATCAGGCGAGGCCGAATGCGAAGATAACATGTCTGATGATGGCTGCTCAGTGGCAGGAACCGAGTGTTCTGTAGGTGGTGCTTCAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT