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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagttcaatatttcatgaccacaatgattgccattatgctgataattatacaagaaaatctttttcctcgccctatattgcagGTTTCATTGTATGGCCACTCGTTAGGAAGTGTTTTGTCGTATGATATACTTTGTCATCAAGAATCCCTTTGGGCCCCATTTCCAACAGAGTATCTGAACA

Basic information

species Zea mays
transcript GRMZM2G318860_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G318860_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os08g01920.1 (Oryza sativa), 3'ss of exon 10
----------gtttgtagttcaatatttcatgaccacaatgattgccattatgctgataattatacaagaaaatcttt---ttcctcgccctatattgcagGTTTCATTGTATGGCCACTCGTTAGGAAGTGTTTTGTCGTATGATATACTTTGTCATCAAGAATCCCTTTGGGCCCCATTTCCAACAGAGTATCTGAACA
           |      |   | || || | |  |      ||||  || |||| ||  ||| |||| ||||  | |   |||||  |    | |||||||||||| | ||||| |||||||||||||||||| | || ||||| |||||||| || ||||||||   ||  || |||||||||  ||| ||| |||| |
gtttgcacacatcacccttcggaaatatctttaggagtgcacttgcatttctgctaatggttaaacaaaaaaacttatgtgttcctttcttgtttttgcagGTTTCAATATATGGGCACTCGTTAGGAAGTGTTCTATCTTATGACATACTTTGCCACCAAGAATCTTCTTCTGCACCATTTCCAGTAGATTATATGAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccattatgctgataattatacaagaaaatctttttcctcgccctatattgcagGTTTCATTGTATGGCCACTCGTTAGGAAGTGTTTTGTCGTATGATATACTTTGTCATCAAGAATCCCTTTGGGCCCCATTTCCAACAGAGTATCTGAACA
        tgctgat  putative branch site (score: 3)
                              tctttttcctcgccct  putative PPT
             ataattatacaagaaa  TA-rich tract