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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctgtaataataaaataaaaggctacactatactacacactttcttgccatacattaaatctgacggtcattttttttattcctgacgacgcccgcagCCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGACCGCTCGTTTGTCAGCCTAGCACCGGGGTGCATGAACGCCCAGTATATG

Basic information

species Zea mays
transcript GRMZM2G311165_T06
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211046633|gb|FL335075.1|FL335075
EST:     AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAG                         CCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA
genomic: AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAGgtagtacctt ... acgcccgcagCCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA
EST: gi|31354016|gb|CD438373.1|CD438373
EST:     AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAG                         CCGCCGCCGCCG
genomic: AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAGgtagtacctt ... acgcccgcagCCGCCGCCGCCG
EST: gi|50339227|gb|CO534353.1|CO534353
EST:     AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAG                         CCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA
genomic: AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAGgtagtacctt ... acgcccgcagCCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA
EST: gi|50338961|gb|CO534087.1|CO534087
EST:     AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAG                         CCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA
genomic: AGCGAGCGCGGTGGAGTACATGGATGAAGTATTGAAGGCGTTGTCGCCAGgtagtacctt ... acgcccgcagCCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgccatacattaaatctgacggtcattttttttattcctgacgacgcccgcagCCGCCGCCGCCGACGACGGAGGAGCAGCACCTCTCGTCTGTCCACCGCTGACCGCTCGTTTGTCAGCCTAGCACCGGGGTGCATGAACGCCCAGTATATG
                                     tcctgac  putative branch site (score: 2)
                        tcattttttttatt  TA-rich tract