Sequence
atgc intronic sequence ATGC exonic sequence...gcctgcatgttactgcacgttttatgatgtcttgtttgagttgaaatcttttatatatgcaatttttattcttctaatgccaactaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA07G35010.1 (Glycine max), 3'ss of exon 1
gcctgcatgttactgcacgttttatgatgtcttgtttgagttgaaatcttttatatatgcaatttttattcttcta-atgccaactaactccataa----tgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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---tgcttattttcac-catgttgtga-attttgtaaatatttatatcctgtttttgaaattctgttggaggtttacatattaattgtaatgttggcccctgcagGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGG
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA20G02860.1 (Glycine max), 3'ss of exon 2
gcctgcatgttactgc-acgttttatgatgtct-tgtttgagttgaaatcttttatatatgc--aatttttattcttctaatgcca-actaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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-gttgcttattttcaccatgttgtaaattgtaaatatttatatcctgtttttgaaattctgttggaggtttacatattaattgtaatgttggcccc----tgcagGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGG
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 10
lower sequence: AT4G19560.1 (Arabidopsis thaliana), 3'ss of exon 2
----gcctgcatgttactgcacgttttatgatgtcttgtttgagt-tgaaatcttttatatatgcaatttttattcttctaatgccaactaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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acttattcccaagttgtcttcattgtcatagttccatctatatgtatgaagcttttcgttttttggatgaatgttag-ctgat----atgaatttctcaacgcagTCCCCAGGTAACAATAGCCACTGCTATATTTTTCTGTCACCGATTCTTCCTTCGTCAATCACATGCGAAAAATGACAGACAG
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 10
lower sequence: PP1S80_193V6.1 (Physcomitrella patens), 3'ss of exon 1
gcctgcatgttactgcacgttttatgatgtc-ttgtttgagttgaaatcttttat-atatgcaatttttattcttctaatgccaactaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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-cagatatgttgaacattatttagtgattacgttgtttgtatagtacgtttgtattatagctcaggagtaacatggtc-tgtcttttaacatgatgatgcagGCCTCAAGTGACTATTGCAACAGCCATTGTGTTTTGCCATCGGTTTTTCCATCGTCAATCGCATAAAAAGAACGACAGACAT
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 10
lower sequence: PP1S119_132V6.2 (Physcomitrella patens), 3'ss of exon 3
gcctgcatgttactgcacgttttatgatgt-cttgtttgagttgaaatcttttatatatgcaatttttattcttctaatgccaactaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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ctcggtgtataatcacctgttaagctccgttcctgctcactgcttgactttcattaggcttgatcttagtgtattttat-taatcctcatggaaaccgcagTCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76937118|gb|DV175047.1|DV175047EST: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGT GCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
genomic: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatat ... cataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
EST:
gi|93283332|gb|EB675596.1|EB675596EST: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGT GCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
genomic: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatat ... cataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
EST:
gi|78111792|gb|DV530189.1|DV530189EST: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGT GCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
genomic: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatat ... cataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
EST:
gi|149102056|gb|EE287526.2|EE287526EST: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGT GCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
genomic: CGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatat ... cataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
18 (upstream exon),
32 (downstream exon)
Score:
1ATTCCGTATCGAGGAGGGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatat ... cataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcttttatatatgcaatttttattcttctaatgccaactaactccataatgtagGCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGG
aactaac putative branch site (score: 1)
ttatatatgcaatttt TA-rich tract