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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtttgtgtatgaaatatagtactatacaatttttaaccaaaaaatgatagctacaagctcagttacaaattttctttctatgtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG

Basic information

species Zea mays
transcript GRMZM2G305254_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305254_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 11
gtacagtttgtgtatgaaatatagtactatacaatttttaaccaaaaaatgatagctacaagctcagttacaaattttctttctatgtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG
||||||||  |        || ||| |  |||| |||||| ||| || |  ||   | | |   | |   |||  ||  ||||| ||  ||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
gtacagttatt--------tacagtgc-gtacatttttta-ccagaagacaatgaatccca---ctgcctcaa-cttgatttctgtgc-tttttagGTTAATCAAATTAGAGATTCTTTGGCAGTTATGGGCAACAACAGCACTGCTTTTAGCCTGCCCCAG

upper sequence: GRMZM2G305254_T04 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------------------gtacagtttgtgtatgaaatatagtactatacaatttttaaccaaaaaatgatagctacaagctcagttacaaattttctttctatgtgttt------ttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG
                                                                ||  | |   ||||   || |  ||  || ||||||  ||  |  |   ||    ||||  ||    ||    || |    |||   ||        | ||||||||||||| || ||||| |||||  |||||||  || |||||||||| |||||||| || || 
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA

upper sequence: GRMZM2G305254_T04 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------------------------------gtacagtttgtgtatgaaatatagtactatacaatttttaaccaaaaaatgatagctacaagctcagttacaaattttctttctat------------gtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG
                                                                             ||  | |   ||||   || |  ||  || ||||||   |  |  |    |    ||| ||    |     ||| |  ||| ||                |  | ||||||||||||| |||||||| ||||| ||||||||  || |||| ||||| |||||||| || || 
gtatggttttccatttgttttaaagcaaatgatctgatggaaggctttgtttactatttaattgcagggaacaaaaatattgatatggtattttatcttctaaaattcaatttccgattatcagtaaaatagtactagtctggaattgaatatgttttataacactaaaagtcaacttcgtcagGTCAATCAAATCCGAGATTCATTGGCTGTTATGGGTGACAACAGTACTGCCTTTAGCTTACCGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481497|gb|EY254329.1|EY254329
EST:     TAATGGTGACAGATATATTAATGAG                         GTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
genomic: TAATGGTGACAGATATATTAATGAGgtacagtttg ... gtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
EST: gi|19057930|gb|BM736597.1|BM736597
EST:     TAATGGTGACAGATATATTAATGAG                         GTCAATCAAATCCGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
genomic: TAATGGTGACAGATATATTAATGAGgtacagtttg ... gtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
EST: gi|18963930|gb|BM660710.1|BM660710
EST:     TAATGGTGACAGATATATTAATGAG                         GTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
genomic: TAATGGTGACAGATATATTAATGAGgtacagtttg ... gtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
EST: gi|18963438|gb|BM660435.1|BM660435
EST:     TAATGGTGACAGATATATTAATGAG                         GTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT
genomic: TAATGGTGACAGATATATTAATGAGgtacagtttg ... gtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaaaaatgatagctacaagctcagttacaaattttctttctatgtgtttttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG
                                 ttttctttctatgt  CT-rich tract
                          ttacaaattttcttt  TA-rich tract