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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaattatctgaagtctgcactaatgtgaatcagttttcacacattaggttggttcagtatcattatgtgatatgttaggtttctgaagtggaattcgtttttactaatgatccagcaaatgcaacttatctttacaaatcttgcagTTTACTTCCTCCAACTGCCCAGAAAGGTGAAGTCACAAAGGCATTGACAG

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305007_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g54790.1 (Oryza sativa), 3'ss of exon 11
gtaagaaaattatctgaagtctgcactaatgtgaatcagttttcacacattaggttggttcagtatcattatgtgatatgttaggtttctgaagtggaattcgtttt---tactaatgatccagcaaatgcaacttatctttacaaatcttgcagTTTACTTCCTCCAACTGCCCAGAAAGGTGAAGTCACAAAGGCATTGACAG
                                                                            || |        || |  |  | || |   |   ||    ||   |  || ||   || ||||||||  | |  ||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||
---------------------------------------------------------------------------gtaagaataagcactaacatccagttggcgctgggtatctgtgtatccccatatctgacctatcttta--atttctgcagTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcgtttttactaatgatccagcaaatgcaacttatctttacaaatcttgcagTTTACTTCCTCCAACTGCCCAGAAAGGTGAAGTCACAAAGGCATTGACAG
          tactaat  putative branch site (score: 1)
      tttttactaatgat  TA-rich tract