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gtttgttcagatcctatttaccttggatcctctattctgacccatgttgatgaatgttctgatacattatcgattttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTACTATCCTGTTGAGACAGCAAAGAGGTCAAACATGCGTCACAGGCCAATTG
species | Zea mays |
transcript | GRMZM2G304362_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTACEST: gi|211102666|gb|FK948700.1|FK948700
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
EST: GTAGCAGTGATTCAAAAMATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTACTTACAATCTWAACAAAATTATCGATATTAATTACEST: gi|33098100|gb|CF058060.1|CF058060
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
EST: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTACTTACAGTCTTAACAAAATTATCGATATTAATTACEST: gi|32931387|gb|CF036199.1|CF036199
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
EST: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTACEST: gi|211102667|gb|FK948701.1|FK948701
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
EST: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTEST: gi|32930756|gb|CF035568.1|CF035568
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTT
EST: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAG GTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
genomic: GTAGCAGTGATTCAAAAAATAGATATTTTGATTTTGAGAAGCTAGCTGAGgtttgttcag ... attttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTAC
tcctctattctgacccatgttgatgaatgttctgatacattatcgattttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTACTATCCTGTTGAGACAGCAAAGAGGTCAAACATGCGTCACAGGCCAATTG
atacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttcagatcctatttaccttggatcctctattctgacccatgttgatgaatgttctgatacattatcgattttggcagGTTACCTCAACTGTTACTTACAATCTTAACAAAATTATCGATATTAATTACTATCCTGTTGAGACAGCAAAGAGGTCAAACATGCGTCACAGGCCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG