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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaacactgagccatttttgtatttatattacactgttctgatcactgcatgtatgaccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGTGTTTCTGTGTCACTTGATCCATCAAAGATCTGGAGTA

Basic information

species Zea mays
transcript GRMZM2G300862_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 9
gtatgttgaaca-ctgagccatt--tttgtatttatattacactgttctgatcactgcatgtatgaccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGTGTTTCTGTGTCACTTGATCCATCAAAGATCTGGAGTA
||||||| | ||  ||  ||| |  |||  ||| | ||  || | |||||||| ||   ||||||  |||||| |||| ||  ||||||| ||||||||| | |||||||| |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
gtatgttcagcaattggtccagtaattttaattcacatgtcattattctgatcgctctctgtatgcgcttgagaagGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101053|gb|EE187151.2|EE187151
EST:     GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGG-TTTTCTGGCAAGG                         GTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACC
genomic: GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGGTTTTTCTGGCAAGGgtatgttgaa ... ccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACC
EST: gi|89759013|gb|DY687973.1|DY687973
EST:     GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGGTTTT-CTGGCAAGG                         GTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATT
genomic: GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGGTTTTTCTGGCAAGGgtatgttgaa ... ccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATT
EST: gi|76911222|gb|DV164206.1|DV164206
EST:     GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGG-TTTTCTGGCAAGG                         GTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACC
genomic: GGACATTGTGAGCACTCGGATGCTTGGTCAGTATGGTTTTTCTGGCAAGGgtatgttgaa ... ccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttgtatttatattacactgttctgatcactgcatgtatgaccttgagcagGTATTTGCTATATTTGAAGATCTATGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGTGTTTCTGTGTCACTTGATCCATCAAAGATCTGGAGTA
                        ttctgat  putative branch site (score: 3)
     ttgtatttatattaca  TA-rich tract