Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgcacctgcctcttattgtgtgcattattgaggctcaggctcacagcaattatcattgaaacatttagctgacaattctttgctaacaatcacttaaagGTTCCATTTGAAGTCCTTGTACGTAGGCAGATCAGCAGATTGCTTGATCCAAGTCTTCAGTGTGCACAGTTCATATATGATGAACTTGTAAAG

Basic information

species Zea mays
transcript GRMZM2G180335_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180335_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 10
gtaagatgcacctgcctcttattgtgtgcattattgaggctcaggctcacagcaattatcattgaaacatttagctgacaattctttgctaacaatcacttaa-agGTTCCATTTGAAGTCCTTGTACGTAGGCAGATCAGCAGATTGCTTGATCCAAGTCTTCAGTGTGCACAGTTCATATATGATGAACTTGTAAAG
      |  |||  ||   | | |   | |  ||||          |||  |  || ||          || ||||||||||| ||   |  | | || ||   |||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| || || |||
-----gtataccatcccactttaggaagaacgattgtaagagtaattcatgg--atgatggccag----ttaagctgacaatttttccttcgctaacatttctcagGTACCTTTTGAGGTCCTTGTACGCAGGCAGATCAGCAGATTGCTTGATCCAAGCCTTCAGTGTGCAGGTTTCATATACGATGAGCTAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74238214|gb|DT646128.1|DT646128
EST:     TGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA                         GTTCCATTTGAAGTCCTTGTACGTAGGCAGATCAGCAGATTGCTTGATCCA
genomic: TGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAAgtaagatgca ... tcacttaaagGTTCCATTTGAAGTCCTTGTACGTAGGCAGATCAGCAGATTGCTTGATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaattatcattgaaacatttagctgacaattctttgctaacaatcacttaaagGTTCCATTTGAAGTCCTTGTACGTAGGCAGATCAGCAGATTGCTTGATCCAAGTCTTCAGTGTGCACAGTTCATATATGATGAACTTGTAAAG
                                    tgctaac  putative branch site (score: 1)
              aaacattta  TA-rich tract