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...cttctgtttggggtttctcactgagtcaaagtttttggtattttatttttggcctcatccagcttgatagattattgattcatttctgatttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|32933149|gb|CF037961.1|CF037961
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|32935217|gb|CF040029.1|CF040029
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|211488019|gb|FL401529.1|FL401529
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGAATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|60399477|gb|DN232289.1|DN232289
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|211296491|gb|FL380959.1|FL380959
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|211371062|gb|FL377775.1|FL377775
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGAATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|32933726|gb|CF038538.1|CF038538
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|9731923|gb|BE510675.1|BE510675
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGEST: gi|74245848|gb|DT653762.1|DT653762
genomic: AGGTGGCAAGTCTAGTTGACAAAGAGGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
EST: ATATTTTTAGAG TTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
genomic: ATATTTTTAGAGgtaaaatacc ... ttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGG
tttttggcctcatccagcttgatagattattgattcatttctgatttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
ttctgat putative branch site (score: 136)
tttgtct CT-rich tract
attattgattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctgtttggggtttctcactgagtcaaagtttttggtattttatttttggcctcatccagcttgatagattattgattcatttctgatttgtctgcagTTTTTGGATCTCTTTGGGGATGCAAAGTCAATCAAGAAGGCTTTAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- tctgttt
- - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga