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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtgggcatccttgtttcagtatacctcagtacattttgcatttagcaggctactcattagtgttttcttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCTGGTTGCAGCGGAACTCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCG

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174830_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g35350.1 (Oryza sativa), 3'ss of exon 10
gtaagtt-tgtgggcatccttgtttcagtatacctcagtacattttgcatttagcaggctactcat-tagtgttttcttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCTGGTTGCAGCGGAACTCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCG
||||||| | || |  | |||||        | ||||  |  | |||| |  || ||  |   | |  |  ||| ||||| ||  ||||||| |||||||||||||| | |||||||||||| ||| |||||||||| |||||||| |||  ||| |||||||||||||||||||| |||||||| |
gtaagttgtatgagatttcttgt--------atctcacaaagtattgc-taaagtagattttccttacatagttatcttcttgttagATGGTATGGTCAAGAGTGAAAATCCATGGTCCTCATCCAACACCTCGAGCCGGTTGCAGTGGAGTTCTATGTGGAACTAAGTGGTACATTGCTGGCGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340595|gb|DN207568.1|DN207568
EST:     ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACA                         ATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT
genomic: ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACAgtaagtttgt ... ttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT
EST: gi|91873012|gb|EB402969.1|EB402969
EST:     ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACA                         ATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT
genomic: ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACAgtaagtttgt ... ttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT
EST: gi|211020705|gb|FL318029.1|FL318029
EST:     ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACA                         ATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT
genomic: ACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACAgtaagtttgt ... ttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctcagtacattttgcatttagcaggctactcattagtgttttcttcctgacagATGGTTTGGTCAAGAGTGAAGACCCATGGTCCTCACCCATCACCTCGAGCTGGTTGCAGCGGAACTCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCG
                                      tgttttcttcct  CT-rich tract
       tacatttt  TA-rich tract