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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatcagttccagggaacattgtttcttttccccattgcactctttgaatgagcaagaggtaaggcctttgtaatttatcaacgttgcaatttcacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGAGAGTAATTCTGCCAAAACAATTGCTGTGAGCGCACATGAGATACTTATG

Basic information

species Zea mays
transcript GRMZM2G174696_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174696_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g20750.1 (Oryza sativa), 3'ss of exon 10
gtaagcatcagttccagggaacattgtttcttttccccat----tgcactctttgaatgagcaagaggtaaggcctttgtaatttatcaacgttgcaatttcacgtt-------gcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGAGAGTAAT-TCTGCCAAA-ACAATTGCTGTGAGCGCACATGAGATACTTATG
                    | ||  | || |  ||  ||    |  |   |||   | | ||||| || ||   ||    |||  | |   |||  |  | | |||       ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  | ||  ||    ||| |  |||| |      |||  || | ||
-----------------aacaaatgttctcatgaccagatgaagtatatattttttgttaacaagaagtgagtttttca-gattagtgacttttgtgaacttatgttatgtggtgcagATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGAGAGTAAAATATGTTAACTGGAATGGTCGTGA-CTTGTGAGAGG-ACATGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113638448|gb|DW801794.1|DW801794
EST:     ATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|32919687|gb|CF024499.1|CF024499
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGGCCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|37398312|gb|CF636468.1|CF636468
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGTTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|211276272|gb|FL458556.1|FL458556
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|166531878|gb|EG258452.1|EG258452
EST:     GGTTGAACGTGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: GGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|6095402|gb|AW120069.1|AW120069
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|6095403|gb|AW120070.1|AW120070
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|211352868|gb|FL030242.1|FL030242
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTTGGAATGACCGTAGG
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTT-GGAATGACCGTAGG
EST: gi|71428446|gb|DR809496.1|DR809496
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|32911927|gb|CF016739.1|CF016739
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|60338504|gb|DN205477.1|DN205477
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCTTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|5607738|gb|AI901405.1|AI901405
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGT
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGT
EST: gi|6095404|gb|AW120071.1|AW120071
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|60355450|gb|DN222423.1|DN222423
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|83279399|gb|DV943407.1|DV943407
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
EST: gi|32919688|gb|CF024500.1|CF024500
EST:     ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAG                         ATTGGCCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA
genomic: ACTTGGAAGAGAGGTTGAACATGGGTGTCAACTTCCTTCTATCTGCTGAGgtaagcatca ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagcaagaggtaaggcctttgtaatttatcaacgttgcaatttcacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTAGGAGAGTAATTCTGCCAAAACAATTGCTGTGAGCGCACATGAGATACTTATG
                   tttgtaatttatcaa  TA-rich tract