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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaatcatacttatcaattaccttttcattcttaagctttcatacagtgacatatgtttcaatcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350086|gb|DN217059.1|DN217059
EST:     AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGC                         ATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
genomic: AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGCgtaagttaaa ... tcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
EST: gi|37389283|gb|CF631860.1|CF631860
EST:     AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGC                         ATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
genomic: AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGCgtaagttaaa ... tcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
EST: gi|211208133|gb|FK984613.1|FK984613
EST:     AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGC                         ATGCCCCGAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAGA
genomic: AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGCgtaagttaaa ... tcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAGA
EST: gi|83278170|gb|DV942178.1|DV942178
EST:     AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGC                         ATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
genomic: AATCTCCTTCTACACCCATGTCTAGACTTTCCACAGCAGACTCACCAAGCgtaagttaaa ... tcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccttttcattcttaagctttcatacagtgacatatgtttcaatcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG
                                             tcatcctc  CT-rich tract
     ttttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttaaatcatacttatcaattaccttttcattcttaagctttcatacagtgacatatgtttcaatcatcctcagATGCCCCAAAAGCTGACATATTCTCCAGCAAAGAATAAGCCTTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA