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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaattagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcagCTGGCCGAGATTGCACCCTCATCTTTGGTGCTGTTCATCTTAAGGAAACTGCCGCCAAGGCGTGGGATTGCACAATACCATCCAATCCATTAGTTTGTCT

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 10
gtatgttttttattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaattagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcagCTGGCCGAGATTGCACCCTCATCTTTGGTGCTGTTCATCTTAAGGAAACTGCCGCCAAGGCGTGGGATTGCACAATACCATCCAATCCATTAGTTTGTCT
                                                      |     | | || |||||| ||   | || ||     | ||   |  |  |  ||| |||| || |   |  ||  || | | | ||  ||      || |||| |||  ||||||| ||| ||| |||||||||||||||| ||||||||||| || || |  || |||||  |||| |||||||||||||||||| |     
----------------------------------------------------ctgcaaaagcaatttctttgtcgtgttattttgaatatgtcta---gaccaataattgtacttactgag--tgcttgttgatagcgttcattttctctttg-gcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTACCACCTAAACGGGGGATCACACAGTACCATCCAATCCATTAGATCAGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcagCTGGCCGAGATTGCACCCTCATCTTTGGTGCTGTTCATCTTAAGGAAACTGCCGCCAAGGCGTGGGATTGCACAATACCATCCAATCCATTAGTTTGTCT
                atattctttt  TA-rich tract