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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatacatgataaattcatatgtgaaacttattattttctaaatcttatgaagcttctatccgattctagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAG

Basic information

species Zea mays
transcript GRMZM2G168629_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 3'ss of exon 10
---------gtaaatacatgataaattcatatgtgaaacttattat--tttctaaatcttatgaagcttctatccgattctagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAG
          |  ||  || ||   |   | | |||   || ||    ||| | ||||| |||||||||||||  ||||||||||||| || |||||||| || |||||| |||||||||||||||||||  | || ||||||||||| ||||| |||||||| ||
gtaattgctttgtatcaataatttgtcagtctctgagttttctttctgtttgtcaatctgatgaagcttctatatgattctagATGGACATCTTTAACACATTTATTGAGTTGTTACGCCAAACTGGTAACATGACAAAAGGACAAGGTGACATTGATGAGTCTAG

upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 9
--gtaaatacatgataaattcatatgtgaaacttattattttctaaat-cttatgaagcttctatccgattctagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAG----
   ||   | || |  | || || ||| |   |||            | ||  |  | |    ||  | ||  |||||||| ||||||| || ||||||||||| || || |||||||| ||||| || ||||| ||    ||    |||||    ||    
gtatacccaaataaatattttatttgtaatctttacagcaaaaaggttgctcctttaacacggatatg-ttgcagATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGATTGATGCAGATGAAATGAGGCAA

upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA07G40230.1 (Glycine max), 3'ss of exon 10
--gtaaatacatgataaattcatatgtgaaacttattattttctaaatcttatgaagcttctatccgattctagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGAT--GAGTCCAG
   ||   | || |  | ||  | | |     |||          |  ||| |  | | |  ||  | ||  |||||||| ||||||| || ||||||||||| || || |||||||| ||||| || ||||| ||    ||    |||  ||| | | 
gtatacccaaataaatattttgtttttagtctttacagcaaaaggatgcttctttaacatggatatg-ttgcagATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGACAGATGCAGATATGAGGCAA-

upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 10
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 11
gtaaatacatgata--aattcatatgtgaaacttattattttctaaatcttatgaagcttctatccgattc------tagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAG
||||    |  ||   |||| |||   || | || || |  |||| |  |  |  | | |||      |||       |||||||| | || || || || ||||||||  ||||||||||||| |||||||||||||| ||    |||||  ||||    ||
gtaagccaaaaatgttaatttata---gatatttgttttcctctatacatggttgatcatctggttttttcatgattcagATGGATGTGTTCAATACATTTATTGAGCTACTACGCCAAACTGGAAATGTTACGAAAGGGCAGACTGACATGAATGAACTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatatgtgaaacttattattttctaaatcttatgaagcttctatccgattctagATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAG
                     ttctaaa  putative branch site (score: 2)
                                      cttctatcc  putative PPT
         aaacttattattttct  TA-rich tract