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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttaacctagcctacttgtataccattaggttgttgtcctctagtgtaattttaactaatggtatttgataagggcttgtgatctatttcattttagGTCCCTGTATACAAAGAGCCATCTTTTGTTATCCCAGGAGTTCCAGCAATAATTCAACATGAAATAATGAATAATAGAAGACATGTACTGACAAAG

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g06810.4 (Oryza sativa), 3'ss of exon 10
atttttaacc-tagcctacttgtataccattaggttgttgtcctctagtgtaattttaactaatggtatttgataagggcttgtg----atctatttcattttagGTCCCTGTATACAAAGAGCCATCTTTTGTTATCCCAGGAGTTCCAGCAATAATTCAACATGAAATAATGAATAATAGAAGACATGTACTGACAAAG
     ||||  | ||||   |  | |     || |||||   || | | | ||  ||   || ||||  || || || |||| |        |||  || ||||||||||| || ||||||| |||||||   |||| || |||||||||||||||| ||| ||||| ||  |||||||||||||||||||| |||| |||
---aataactgttgcctgagtaaacatagaaagtttgtttaactatgg-gcaacattt-ttattggtgcttaatgagtgcttatatcatgattataccactttagGTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATAACTCAGCATGAGATCCTGAATAATAGAAGACATGTATTGACGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433407|gb|DR814457.1|DR814457
EST:     GGAATTTGTCATTCTCAAGGGCAAGAGCATCTTTAGAAGGATCGGCACCT                         GTCCCTGTATACAAAGAGCCATCTTTTGTTATCCCAGGAGTTCCAGCAATA
genomic: GGAATTTGTCATTCTCAAGGGCAAGAGCATCTTTAGAAGGATCGGCACCTgtaagcatga ... ttcattttagGTCCCTGTATACAAAGAGCCATCTTTTGTTATCCCAGGAGTTCCAGCAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtaattttaactaatggtatttgataagggcttgtgatctatttcattttagGTCCCTGTATACAAAGAGCCATCTTTTGTTATCCCAGGAGTTCCAGCAATAATTCAACATGAAATAATGAATAATAGAAGACATGTACTGACAAAG
                                            tttcatttt  CT-rich tract
                                       atctatttcatttta  TA-rich tract