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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattgcactactttaatttcaccgttgtactgggaggtaagttaatttgcttattcgtcagGTGTGGCAAGCAGCGGCTTCGAGAGGCTCGAATACAAGGTGTTGACTATCTCATACTTGGCCTTGCCGGTATATGTCTGGGCACACTCGCTAAAGTGAGC

Basic information

species Zea mays
transcript GRMZM2G166889_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g51460.1 (Oryza sativa), 3'ss of exon 10
-----------------------gtaagttattgcactactttaatttcaccgttgtac-tgggaggtaagttaatttgctt-attcg--tcagGTGTGGCAAGCAGCGGCTTCGAGAGGCTCGAATACAAGGTGTTGACTATCTCATACTTGGCCTTGCCGGTATATGTCTGGGCACACTCGCTAAAGTGAGC
                        ||   |||  |||| |  |  ||  |    | ||  |  |   ||   |  ||| ||| ||||   ||||||||||||||||  |||| || || ||| |||||||||| ||||||||||| || || |||||||| ||||||||||| || ||| | ||||||||||||
gtaaaagaatggagtattttttcttactatatatcactgccattcttaaatatgtatatataagcattactcttgttttcttcattctgttcagGTGTGGCAAGCAAAGGCTCCGTGAAGCTAGAATACAAGGCGTTGACTATCTGATCCTGGGCCTTGCTGGTATATGTCTAGGGACATTAGCTAAAGTGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actactttaatttcaccgttgtactgggaggtaagttaatttgcttattcgtcagGTGTGGCAAGCAGCGGCTTCGAGAGGCTCGAATACAAGGTGTTGACTATCTCATACTTGGCCTTGCCGGTATATGTCTGGGCACACTCGCTAAAGTGAGC
                                 agttaat  putative branch site (score: 4)
                                       tttgctt  CT-rich tract
                                   ttaatttgcttatt  TA-rich tract